PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G039400.1
Common NameB456_003G039400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 116aa    MW: 12822 Da    PI: 9.6564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G039400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.00052741001032
                         HHHHHHHHHHHHHHHCTSCCC...... CS
                 HLH  10 rrRRdriNsafeeLrellPkas....k 32 
                         r RR+   +++e L++++ k++    k
  Gorai.003G039400.1  74 RLRRASTSDCLESLKSIVVKPPlslsK 100
                         88*****************97545551 PP

Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MFISLFSSSF LFYFGCRGQW GCYRIPSTVK SSCSMPVQKL LSHVIGIIRV LFSRKEESVL  60
ERSLAYLLLN GKGRLRRAST SDCLESLKSI VVKPPLSLSK LQDQEAAEEA EKSAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D2MJ183e-78A0A0D2MJ18_G
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]